J5_6XZB_004

3D structure

PDB id

6XZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

6XZB|1|A2|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6XZB_004 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0579

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6XZB|1|A2|C|47
6XZB|1|A2|G|48
6XZB|1|A2|A|49
6XZB|1|A2|U|50
6XZB|1|A2|G|51
6XZB|1|A2|A|52
6XZB|1|A2|A|53
6XZB|1|A2|G|54
*
6XZB|1|A2|C|116
6XZB|1|A2|G|117
6XZB|1|A2|A|118
6XZB|1|A2|A|119
6XZB|1|A2|U|120
6XZB|1|A2|G|121
*
6XZB|1|A2|C|130
6XZB|1|A2|A|131
*
6XZB|1|A2|U|148
6XZB|1|A2|A|149
6XZB|1|A2|U|150
*
6XZB|1|A2|A|176
6XZB|1|A2|G|177
6XZB|1|A2|G|178

Current chains

Chain A2

23S rRNA

Nearby chains

Chain c2

50S ribosomal protein L34