3D structure

PDB id
6XZB (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).
Experimental method
ELECTRON MICROSCOPY
Resolution
2.54 Å

Loop

Sequence
CGAUGAAG*CGAAUG*CA*UAU*AGG
Length
22 nucleotides
Bulged bases
6XZB|1|A2|U|50
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_6XZB_004 not in the Motif Atlas
Homologous match to J5_5J7L_013
Geometric discrepancy: 0.0579
The information below is about J5_5J7L_013
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_01737.2
Basepair signature
cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F
Number of instances in this motif group
5

Unit IDs

6XZB|1|A2|C|47
6XZB|1|A2|G|48
6XZB|1|A2|A|49
6XZB|1|A2|U|50
6XZB|1|A2|G|51
6XZB|1|A2|A|52
6XZB|1|A2|A|53
6XZB|1|A2|G|54
*
6XZB|1|A2|C|116
6XZB|1|A2|G|117
6XZB|1|A2|A|118
6XZB|1|A2|A|119
6XZB|1|A2|U|120
6XZB|1|A2|G|121
*
6XZB|1|A2|C|130
6XZB|1|A2|A|131
*
6XZB|1|A2|U|148
6XZB|1|A2|A|149
6XZB|1|A2|U|150
*
6XZB|1|A2|A|176
6XZB|1|A2|G|177
6XZB|1|A2|G|178

Current chains

Chain A2
23S rRNA

Nearby chains

Chain c2
50S ribosomal protein L34

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1165 s