3D structure

PDB id
6Y57 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of human ribosome in hybrid-PRE state
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
GCAAGCCGG*UG*UG*CGGACCAGG*CAC
Length
25 nucleotides
Bulged bases
6Y57|1|L5|G|3620, 6Y57|1|L5|G|3625
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_6Y57_003 not in the Motif Atlas
Homologous match to J5_8C3A_004
Geometric discrepancy: 0.1042
The information below is about J5_8C3A_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6Y57|1|L5|G|2855
6Y57|1|L5|C|2856
6Y57|1|L5|A|2857
6Y57|1|L5|A|2858
6Y57|1|L5|G|2859
6Y57|1|L5|C|2860
6Y57|1|L5|C|2861
6Y57|1|L5|G|2862
6Y57|1|L5|G|2863
*
6Y57|1|L5|U|2887
6Y57|1|L5|G|2888
*
6Y57|1|L5|U|3613
6Y57|1|L5|G|3614
*
6Y57|1|L5|C|3618
6Y57|1|L5|G|3619
6Y57|1|L5|G|3620
6Y57|1|L5|A|3621
6Y57|1|L5|C|3622
6Y57|1|L5|C|3623
6Y57|1|L5|A|3624
6Y57|1|L5|G|3625
6Y57|1|L5|G|3626
*
6Y57|1|L5|C|3835
6Y57|1|L5|A|3836
6Y57|1|L5|C|3837

Current chains

Chain L5
28S ribosomal RNA

Nearby chains

Chain LB
60S ribosomal protein L3
Chain LR
60S ribosomal protein L19
Chain LV
60S ribosomal protein L23
Chain LW
60S ribosomal protein L24
Chain S2
Small subunit ribosomal RNA; SSU rRNA
Chain SI
40S ribosomal protein S8

Coloring options:


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