J5_6Y57_004
3D structure
- PDB id
- 6Y57 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of human ribosome in hybrid-PRE state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- AGAAGACCC*GGGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU
- Length
- 42 nucleotides
- Bulged bases
- 6Y57|1|L5|A|3908, 6Y57|1|L5|A|4394, 6Y57|1|L5|G|4451, 6Y57|1|L5|U|4452, 6Y57|1|L5|U|4555, 6Y57|1|L5|U|4556
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6Y57|1|L5|A|3903
6Y57|1|L5|G|3904
6Y57|1|L5|A|3905
6Y57|1|L5|A|3906
6Y57|1|L5|G|3907
6Y57|1|L5|A|3908
6Y57|1|L5|C|3909
6Y57|1|L5|C|3910
6Y57|1|L5|C|3911
*
6Y57|1|L5|G|4391
6Y57|1|L5|G|4392
6Y57|1|L5|G|4393
6Y57|1|L5|A|4394
6Y57|1|L5|U|4395
6Y57|1|L5|A|4396
6Y57|1|L5|A|4397
6Y57|1|L5|C|4398
6Y57|1|L5|U|4399
6Y57|1|L5|G|4400
*
6Y57|1|L5|C|4444
6Y57|1|L5|U|4445
6Y57|1|L5|U|4446
6Y57|1|L5|C|4447
6Y57|1|L5|G|4448
6Y57|1|L5|A|4449
6Y57|1|L5|U|4450
6Y57|1|L5|G|4451
6Y57|1|L5|U|4452
6Y57|1|L5|C|4453
*
6Y57|1|L5|G|4528
6Y57|1|L5|G|4529
6Y57|1|L5|U|4530
6Y57|1|L5|U|4531
6Y57|1|L5|U|4532
6Y57|1|L5|A|4533
6Y57|1|L5|G|4534
*
6Y57|1|L5|U|4552
6Y57|1|L5|A|4553
6Y57|1|L5|G|4554
6Y57|1|L5|U|4555
6Y57|1|L5|U|4556
6Y57|1|L5|U|4557
Current chains
- Chain L5
- 28S ribosomal RNA
Nearby chains
- Chain D4
- Transfer RNA; tRNA
- Chain LA
- 60S ribosomal protein L8
- Chain LB
- 60S ribosomal protein L3
- Chain LC
- 60S ribosomal protein L4
- Chain La
- 60S ribosomal protein L27a
- Chain Lb
- 60S ribosomal protein L29
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