J5_6Y69_001

3D structure

PDB id

6Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli 70S ribosome in complex with antibiotic TetracenomycinX

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

6Y69|1|A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6Y69_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0688

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6Y69|1|A|C|47
6Y69|1|A|G|48
6Y69|1|A|A|49
6Y69|1|A|U|50
6Y69|1|A|G|51
6Y69|1|A|A|52
6Y69|1|A|A|53
6Y69|1|A|G|54
*
6Y69|1|A|C|116
6Y69|1|A|G|117
6Y69|1|A|A|118
6Y69|1|A|A|119
6Y69|1|A|U|120
6Y69|1|A|G|121
*
6Y69|1|A|C|130
6Y69|1|A|A|131
*
6Y69|1|A|U|148
6Y69|1|A|A|149
6Y69|1|A|U|150
*
6Y69|1|A|A|176
6Y69|1|A|G|177
6Y69|1|A|G|178

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34