Loop J5_6Y6X

3D structure

PDB id: 6Y6X (explore in PDB, NAKB, or RNA 3D Hub)
Description: Tetracenomycin X bound to the human ribosome
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å

Loop

Sequence: AAGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUUU
Length: 42 nucleotides
Bulged bases: 6Y6X|1|L5|A|3908, 6Y6X|1|L5|A|4394, 6Y6X|1|L5|U|4450, 6Y6X|1|L5|G|4451, 6Y6X|1|L5|U|4555, 6Y6X|1|L5|U|4556
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6Y6X|1|L5|A|3902
6Y6X|1|L5|A|3903
6Y6X|1|L5|G|3904
6Y6X|1|L5|A|3905
6Y6X|1|L5|A|3906
6Y6X|1|L5|G|3907
6Y6X|1|L5|A|3908
6Y6X|1|L5|C|3909
6Y6X|1|L5|C|3910
*
6Y6X|1|L5|G|4392
6Y6X|1|L5|G|4393
6Y6X|1|L5|A|4394
6Y6X|1|L5|U|4395
6Y6X|1|L5|A|4396
6Y6X|1|L5|A|4397
6Y6X|1|L5|C|4398
6Y6X|1|L5|U|4399
6Y6X|1|L5|G|4400
*
6Y6X|1|L5|C|4444
6Y6X|1|L5|U|4445
6Y6X|1|L5|U|4446
6Y6X|1|L5|C|4447
6Y6X|1|L5|G|4448
6Y6X|1|L5|A|4449
6Y6X|1|L5|U|4450
6Y6X|1|L5|G|4451
6Y6X|1|L5|U|4452
6Y6X|1|L5|C|4453
*
6Y6X|1|L5|G|4528
6Y6X|1|L5|G|4529
6Y6X|1|L5|U|4530
6Y6X|1|L5|U|4531
6Y6X|1|L5|U|4532
6Y6X|1|L5|A|4533
6Y6X|1|L5|G|4534
*
6Y6X|1|L5|U|4552
6Y6X|1|L5|A|4553
6Y6X|1|L5|G|4554
6Y6X|1|L5|U|4555
6Y6X|1|L5|U|4556
6Y6X|1|L5|U|4557
6Y6X|1|L5|U|4558

Current chains

Chain L5: 28S ribosomal RNA

Nearby chains

Chain LA: 60S ribosomal protein L8
Chain LB: 60S ribosomal protein L3
Chain LC: 60S ribosomal protein L4
Chain Lb: 60S ribosomal protein L29

J5_6Y6X_004