J5_6YAL_004

3D structure

PDB id

6YAL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 48S late-stage initiation complex with beta-globin mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AUCUUG*CCCCUUG*CGUU*AUGGAAUAG*UGAU

Length

30 nucleotides

Bulged bases

6YAL|1|2|U|678, 6YAL|1|2|U|739, 6YAL|1|2|G|794, 6YAL|1|2|U|867

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6YAL|1|2|A|675
6YAL|1|2|U|676
6YAL|1|2|C|677
6YAL|1|2|U|678
6YAL|1|2|U|679
6YAL|1|2|G|680
*
6YAL|1|2|C|734
6YAL|1|2|C|735
6YAL|1|2|C|736
6YAL|1|2|C|737
6YAL|1|2|U|738
6YAL|1|2|U|739
6YAL|1|2|G|740
*
6YAL|1|2|C|793
6YAL|1|2|G|794
6YAL|1|2|U|795
6YAL|1|2|U|796
*
6YAL|1|2|A|861
6YAL|1|2|U|862
6YAL|1|2|G|863
6YAL|1|2|G|864
6YAL|1|2|A|865
6YAL|1|2|A|866
6YAL|1|2|U|867
6YAL|1|2|A|868
6YAL|1|2|G|869
*
6YAL|1|2|U|910
6YAL|1|2|G|911
6YAL|1|2|A|912
6YAL|1|2|U|913

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain J

40S ribosomal protein eS7

Chain N

40S ribosomal protein uS17

Chain P

40S ribosomal protein uS15

Chain Y

40S ribosomal protein uS8

Chain Z

40S ribosomal protein uS12