J5_6YAM_004

3D structure

PDB id

6YAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 48S late-stage translation initiation complex (LS48S+eIF3 IC) with beta-globin mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AUCUUG*CCCCUUG*CGUU*AUGGAAUAG*UGAU

Length

30 nucleotides

Bulged bases

6YAM|1|2|U|678, 6YAM|1|2|U|739, 6YAM|1|2|G|794, 6YAM|1|2|U|867

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6YAM|1|2|A|675
6YAM|1|2|U|676
6YAM|1|2|C|677
6YAM|1|2|U|678
6YAM|1|2|U|679
6YAM|1|2|G|680
*
6YAM|1|2|C|734
6YAM|1|2|C|735
6YAM|1|2|C|736
6YAM|1|2|C|737
6YAM|1|2|U|738
6YAM|1|2|U|739
6YAM|1|2|G|740
*
6YAM|1|2|C|793
6YAM|1|2|G|794
6YAM|1|2|U|795
6YAM|1|2|U|796
*
6YAM|1|2|A|861
6YAM|1|2|U|862
6YAM|1|2|G|863
6YAM|1|2|G|864
6YAM|1|2|A|865
6YAM|1|2|A|866
6YAM|1|2|U|867
6YAM|1|2|A|868
6YAM|1|2|G|869
*
6YAM|1|2|U|910
6YAM|1|2|G|911
6YAM|1|2|A|912
6YAM|1|2|U|913

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain J

ribosomal protein eS7

Chain N

40S ribosomal protein uS17

Chain P

ribosomal protein uS15

Chain Y

40S ribosomal protein uS8

Chain Z

40S ribosomal protein uS12