J5_6YAN_006

3D structure

PDB id

6YAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 48S late-stage translation initiation complex with histone 4 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.48 Å

Loop

Sequence

AUCUUG*CCCCUUG*CGUU*AUGGAAUAG*UGAU

Length

30 nucleotides

Bulged bases

6YAN|1|2|U|678, 6YAN|1|2|U|739, 6YAN|1|2|G|794, 6YAN|1|2|U|867

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6YAN|1|2|A|675
6YAN|1|2|U|676
6YAN|1|2|C|677
6YAN|1|2|U|678
6YAN|1|2|U|679
6YAN|1|2|G|680
*
6YAN|1|2|C|734
6YAN|1|2|C|735
6YAN|1|2|C|736
6YAN|1|2|C|737
6YAN|1|2|U|738
6YAN|1|2|U|739
6YAN|1|2|G|740
*
6YAN|1|2|C|793
6YAN|1|2|G|794
6YAN|1|2|U|795
6YAN|1|2|U|796
*
6YAN|1|2|A|861
6YAN|1|2|U|862
6YAN|1|2|G|863
6YAN|1|2|G|864
6YAN|1|2|A|865
6YAN|1|2|A|866
6YAN|1|2|U|867
6YAN|1|2|A|868
6YAN|1|2|G|869
*
6YAN|1|2|U|910
6YAN|1|2|G|911
6YAN|1|2|A|912
6YAN|1|2|U|913

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain J

ribosomal protein eS7

Chain N

Ribosomal protein S11

Chain P

ribosomal protein uS15

Chain Y

Ribosomal protein S15a

Chain Z

40S ribosomal protein uS12