J5_6YBW_002
3D structure
- PDB id
- 6YBW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a human 48S translational initiation complex - 40S body
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUUGU*AAAUAAC*GGAAUGAG*CGAGGAUCCAU*AUA(OMG)
- Length
- 35 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6YBW|1|A|C|30
6YBW|1|A|U|31
6YBW|1|A|U|32
6YBW|1|A|G|33
6YBW|1|A|U|34
*
6YBW|1|A|A|521
6YBW|1|A|A|522
6YBW|1|A|A|523
6YBW|1|A|U|524
6YBW|1|A|A|525
6YBW|1|A|A|526
6YBW|1|A|C|527
*
6YBW|1|A|G|558
6YBW|1|A|G|559
6YBW|1|A|A|560
6YBW|1|A|A|561
6YBW|1|A|U|562
6YBW|1|A|G|563
6YBW|1|A|A|564
6YBW|1|A|G|565
*
6YBW|1|A|C|585
6YBW|1|A|G|586
6YBW|1|A|A|587
6YBW|1|A|G|588
6YBW|1|A|G|589
6YBW|1|A|A|590
6YBW|1|A|U|591
6YBW|1|A|C|592
6YBW|1|A|C|593
6YBW|1|A|A|594
6YBW|1|A|U|595
*
6YBW|1|A|A|641
6YBW|1|A|U|642
6YBW|1|A|A|643
6YBW|1|A|OMG|644
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain D
- 40S ribosomal protein S9
- Chain E
- 40S ribosomal protein S23
- Chain F
- 40S ribosomal protein S30
- Chain z
- Eukaryotic translation initiation factor 3 subunit J
Coloring options: