J5_6YBW_004

3D structure

PDB id

6YBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human 48S translational initiation complex - 40S body

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUCGCUC*GGG*UG*CCG*CGACC

Length

20 nucleotides

Bulged bases

6YBW|1|A|G|126, 6YBW|1|A|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6YBW|1|A|G|123
6YBW|1|A|U|124
6YBW|1|A|C|125
6YBW|1|A|G|126
6YBW|1|A|C|127
6YBW|1|A|U|128
6YBW|1|A|C|129
*
6YBW|1|A|G|183
6YBW|1|A|G|184
6YBW|1|A|G|185
*
6YBW|1|A|U|214
6YBW|1|A|G|215
*
6YBW|1|A|C|310
6YBW|1|A|C|311
6YBW|1|A|G|312
*
6YBW|1|A|C|337
6YBW|1|A|G|338
6YBW|1|A|A|339
6YBW|1|A|C|340
6YBW|1|A|C|341

Current chains

Chain A

18S rRNA

Nearby chains

Chain C

40S ribosomal protein S4, X isoform

Chain R

40S ribosomal protein S8

Chain S

40S ribosomal protein S6