J5_6YDW_002
3D structure
- PDB id
- 6YDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 55S mammalian mitochondrial ribosome with mtEFG1 and two tRNAMet (TI-POST)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- AGAAGACC*GGAUAACA*UCGAUGUUG*UGAGUUCAG*CGGUUU
- Length
- 40 nucleotides
- Bulged bases
- 6YDW|1|BA|A|1057, 6YDW|1|BA|A|1271, 6YDW|1|BA|G|1328, 6YDW|1|BA|U|1329, 6YDW|1|BA|U|1408, 6YDW|1|BA|U|1432
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6YDW|1|BA|A|1052
6YDW|1|BA|G|1053
6YDW|1|BA|A|1054
6YDW|1|BA|A|1055
6YDW|1|BA|G|1056
6YDW|1|BA|A|1057
6YDW|1|BA|C|1058
6YDW|1|BA|C|1059
*
6YDW|1|BA|G|1269
6YDW|1|BA|G|1270
6YDW|1|BA|A|1271
6YDW|1|BA|U|1272
6YDW|1|BA|A|1273
6YDW|1|BA|A|1274
6YDW|1|BA|C|1275
6YDW|1|BA|A|1276
*
6YDW|1|BA|U|1323
6YDW|1|BA|C|1324
6YDW|1|BA|G|1325
6YDW|1|BA|A|1326
6YDW|1|BA|U|1327
6YDW|1|BA|G|1328
6YDW|1|BA|U|1329
6YDW|1|BA|U|1330
6YDW|1|BA|G|1331
*
6YDW|1|BA|U|1403
6YDW|1|BA|G|1404
6YDW|1|BA|A|1405
6YDW|1|BA|G|1406
6YDW|1|BA|U|1407
6YDW|1|BA|U|1408
6YDW|1|BA|C|1409
6YDW|1|BA|A|1410
6YDW|1|BA|G|1411
*
6YDW|1|BA|C|1429
6YDW|1|BA|G|1430
6YDW|1|BA|G|1431
6YDW|1|BA|U|1432
6YDW|1|BA|U|1433
6YDW|1|BA|U|1434
Current chains
- Chain BA
- 12S rRNA
Nearby chains
- Chain AV
- tRNAMet
- Chain B5
- Uncharacterized protein
- Chain BE
- ICT1
- Chain BF
- Mitochondrial ribosomal protein L4
- Chain BP
- Uncharacterized protein
- Chain BQ
- Uncharacterized protein
- Chain BW
- Uncharacterized protein
- Chain Bi
- Mitochondrial ribosomal protein L45
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