J5_6YEF_006
3D structure
- PDB id
- 6YEF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S initiation complex with assigned rRNA modifications from Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GAAAGACC*GGAUAACAG*(OMC)CUCG(2MA)UGUC*GGUUCAG*CGGUCC
- Length
- 40 nucleotides
- Bulged bases
- 6YEF|1|A|A|2089, 6YEF|1|A|A|2475, 6YEF|1|A|U|2476, 6YEF|1|A|G|2532, 6YEF|1|A|U|2636, 6YEF|1|A|C|2637
- QA status
- Modified nucleotides: OMC, 2MA
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6YEF|1|A|G|2084
6YEF|1|A|A|2085
6YEF|1|A|A|2086
6YEF|1|A|A|2087
6YEF|1|A|G|2088
6YEF|1|A|A|2089
6YEF|1|A|C|2090
6YEF|1|A|C|2091
*
6YEF|1|A|G|2473
6YEF|1|A|G|2474
6YEF|1|A|A|2475
6YEF|1|A|U|2476
6YEF|1|A|A|2477
6YEF|1|A|A|2478
6YEF|1|A|C|2479
6YEF|1|A|A|2480
6YEF|1|A|G|2481
*
6YEF|1|A|OMC|2525
6YEF|1|A|C|2526
6YEF|1|A|U|2527
6YEF|1|A|C|2528
6YEF|1|A|G|2529
6YEF|1|A|2MA|2530
6YEF|1|A|U|2531
6YEF|1|A|G|2532
6YEF|1|A|U|2533
6YEF|1|A|C|2534
*
6YEF|1|A|G|2609
6YEF|1|A|G|2610
6YEF|1|A|U|2611
6YEF|1|A|U|2612
6YEF|1|A|C|2613
6YEF|1|A|A|2614
6YEF|1|A|G|2615
*
6YEF|1|A|C|2633
6YEF|1|A|G|2634
6YEF|1|A|G|2635
6YEF|1|A|U|2636
6YEF|1|A|C|2637
6YEF|1|A|C|2638
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 4
- 50S ribosomal protein L32
- Chain D
- 50S ribosomal protein L2
- Chain E
- 50S ribosomal protein L3
- Chain F
- 50S ribosomal protein L4
- Chain O
- 50S ribosomal protein L15
- Chain P
- 50S ribosomal protein L16
- Chain Z
- 50S ribosomal protein L27
- Chain x
- Transfer RNA; tRNA
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