J5_6YEF_008

3D structure

PDB id

6YEF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex with assigned rRNA modifications from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGG*CGUG*CUGUUA*UCAGAAAG*CAAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6YEF|1|a|C|37
6YEF|1|a|U|38
6YEF|1|a|G|39
6YEF|1|a|G|40
*
6YEF|1|a|C|411
6YEF|1|a|G|412
6YEF|1|a|U|413
6YEF|1|a|G|414
*
6YEF|1|a|C|444
6YEF|1|a|U|445
6YEF|1|a|G|446
6YEF|1|a|U|447
6YEF|1|a|U|448
6YEF|1|a|A|449
*
6YEF|1|a|U|501
6YEF|1|a|C|502
6YEF|1|a|A|503
6YEF|1|a|G|504
6YEF|1|a|A|505
6YEF|1|a|A|506
6YEF|1|a|A|507
6YEF|1|a|G|508
*
6YEF|1|a|C|553
6YEF|1|a|A|554
6YEF|1|a|A|555
6YEF|1|a|G|556

Current chains

Chain a

16S rRNA

Nearby chains

Chain d

30S ribosomal protein S4

Chain l

30S ribosomal protein S12