J5_6YHS_005
3D structure
- PDB id
- 6YHS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Acinetobacter baumannii ribosome-amikacin complex - 50S subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GAAAGACC*GGAUAACA*UCGAUGU*GUUUAG*CGGUCC
- Length
- 35 nucleotides
- Bulged bases
- 6YHS|1|1|A|2051, 6YHS|1|1|A|2437, 6YHS|1|1|U|2598
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6YHS|1|1|G|2046
6YHS|1|1|A|2047
6YHS|1|1|A|2048
6YHS|1|1|A|2049
6YHS|1|1|G|2050
6YHS|1|1|A|2051
6YHS|1|1|C|2052
6YHS|1|1|C|2053
*
6YHS|1|1|G|2435
6YHS|1|1|G|2436
6YHS|1|1|A|2437
6YHS|1|1|U|2438
6YHS|1|1|A|2439
6YHS|1|1|A|2440
6YHS|1|1|C|2441
6YHS|1|1|A|2442
*
6YHS|1|1|U|2489
6YHS|1|1|C|2490
6YHS|1|1|G|2491
6YHS|1|1|A|2492
6YHS|1|1|U|2493
6YHS|1|1|G|2494
6YHS|1|1|U|2495
*
6YHS|1|1|G|2572
6YHS|1|1|U|2573
6YHS|1|1|U|2574
6YHS|1|1|U|2575
6YHS|1|1|A|2576
6YHS|1|1|G|2577
*
6YHS|1|1|C|2595
6YHS|1|1|G|2596
6YHS|1|1|G|2597
6YHS|1|1|U|2598
6YHS|1|1|C|2599
6YHS|1|1|C|2600
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain A
- 50S ribosomal protein L2
- Chain B
- 50S ribosomal protein L3
- Chain C
- 50S ribosomal protein L4
- Chain H
- 50S ribosomal protein L15
- Chain I
- 50S ribosomal protein L16
- Chain O
- 50S ribosomal protein L22
- Chain X
- 50S ribosomal protein L32
Coloring options: