J5_6YSI_005
3D structure
- PDB id
- 6YSI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Acinetobacter baumannii ribosome-tigecycline complex - 50S subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- GAAAGACC*GGAUAACA*UCGAUGU*GUUUAG*CGGUCC
- Length
- 35 nucleotides
- Bulged bases
- 6YSI|1|1|A|2051, 6YSI|1|1|A|2437, 6YSI|1|1|U|2438, 6YSI|1|1|U|2598
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6YSI|1|1|G|2046
6YSI|1|1|A|2047
6YSI|1|1|A|2048
6YSI|1|1|A|2049
6YSI|1|1|G|2050
6YSI|1|1|A|2051
6YSI|1|1|C|2052
6YSI|1|1|C|2053
*
6YSI|1|1|G|2435
6YSI|1|1|G|2436
6YSI|1|1|A|2437
6YSI|1|1|U|2438
6YSI|1|1|A|2439
6YSI|1|1|A|2440
6YSI|1|1|C|2441
6YSI|1|1|A|2442
*
6YSI|1|1|U|2489
6YSI|1|1|C|2490
6YSI|1|1|G|2491
6YSI|1|1|A|2492
6YSI|1|1|U|2493
6YSI|1|1|G|2494
6YSI|1|1|U|2495
*
6YSI|1|1|G|2572
6YSI|1|1|U|2573
6YSI|1|1|U|2574
6YSI|1|1|U|2575
6YSI|1|1|A|2576
6YSI|1|1|G|2577
*
6YSI|1|1|C|2595
6YSI|1|1|G|2596
6YSI|1|1|G|2597
6YSI|1|1|U|2598
6YSI|1|1|C|2599
6YSI|1|1|C|2600
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain A
- 50S ribosomal protein L2
- Chain B
- 50S ribosomal protein L3
- Chain C
- 50S ribosomal protein L4
- Chain H
- 50S ribosomal protein L15
- Chain I
- 50S ribosomal protein L16
- Chain O
- 50S ribosomal protein L22
- Chain X
- 50S ribosomal protein L32
Coloring options: