J5_6YSR_001

3D structure

PDB id

6YSR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the P+9 stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

6YSR|1|A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6YSR_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.085

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6YSR|1|A|C|47
6YSR|1|A|G|48
6YSR|1|A|A|49
6YSR|1|A|U|50
6YSR|1|A|G|51
6YSR|1|A|A|52
6YSR|1|A|A|53
6YSR|1|A|G|54
*
6YSR|1|A|C|116
6YSR|1|A|G|117
6YSR|1|A|A|118
6YSR|1|A|A|119
6YSR|1|A|U|120
6YSR|1|A|G|121
*
6YSR|1|A|C|130
6YSR|1|A|A|131
*
6YSR|1|A|U|148
6YSR|1|A|A|149
6YSR|1|A|U|150
*
6YSR|1|A|A|176
6YSR|1|A|G|177
6YSR|1|A|G|178

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34