3D structure

PDB id
6YSR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the P+9 stalled ribosome complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CAAG*CGGACGGG*CAC*GAC*GGCAG
Length
23 nucleotides
Bulged bases
6YSR|1|a|A|109, 6YSR|1|a|C|352
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_6YSR_009 not in the Motif Atlas
Homologous match to J5_5J7L_003
Geometric discrepancy: 0.0965
The information below is about J5_5J7L_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_59910.6
Basepair signature
cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
Number of instances in this motif group
4

Unit IDs

6YSR|1|a|C|58
6YSR|1|a|A|59
6YSR|1|a|A|60
6YSR|1|a|G|61
*
6YSR|1|a|C|106
6YSR|1|a|G|107
6YSR|1|a|G|108
6YSR|1|a|A|109
6YSR|1|a|C|110
6YSR|1|a|G|111
6YSR|1|a|G|112
6YSR|1|a|G|113
*
6YSR|1|a|C|314
6YSR|1|a|A|315
6YSR|1|a|C|316
*
6YSR|1|a|G|337
6YSR|1|a|A|338
6YSR|1|a|C|339
*
6YSR|1|a|G|350
6YSR|1|a|G|351
6YSR|1|a|C|352
6YSR|1|a|A|353
6YSR|1|a|G|354

Current chains

Chain a
16S ribosomal RNA

Nearby chains

Chain K
50S ribosomal protein L14
Chain P
50S ribosomal protein L19
Chain p
30S ribosomal protein S16
Chain t
30S ribosomal protein S20

Coloring options:


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