3D structure

PDB id
6YST (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the P+9 ArfB-ribosome complex with P/E hybrid tRNA in the post-hydrolysis state
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GAAAGACC*GGAUAACA*UCG(2MA)(PSU)GUC*GGUUUAG*CGGUCC
Length
37 nucleotides
Bulged bases
6YST|1|A|A|2448, 6YST|1|A|U|2609
QA status
Modified nucleotides: 2MA, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6YST|1|A|G|2057
6YST|1|A|A|2058
6YST|1|A|A|2059
6YST|1|A|A|2060
6YST|1|A|G|2061
6YST|1|A|A|2062
6YST|1|A|C|2063
6YST|1|A|C|2064
*
6YST|1|A|G|2446
6YST|1|A|G|2447
6YST|1|A|A|2448
6YST|1|A|U|2449
6YST|1|A|A|2450
6YST|1|A|A|2451
6YST|1|A|C|2452
6YST|1|A|A|2453
*
6YST|1|A|U|2500
6YST|1|A|C|2501
6YST|1|A|G|2502
6YST|1|A|2MA|2503
6YST|1|A|PSU|2504
6YST|1|A|G|2505
6YST|1|A|U|2506
6YST|1|A|C|2507
*
6YST|1|A|G|2582
6YST|1|A|G|2583
6YST|1|A|U|2584
6YST|1|A|U|2585
6YST|1|A|U|2586
6YST|1|A|A|2587
6YST|1|A|G|2588
*
6YST|1|A|C|2606
6YST|1|A|G|2607
6YST|1|A|G|2608
6YST|1|A|U|2609
6YST|1|A|C|2610
6YST|1|A|C|2611

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain 0
50S ribosomal protein L32
Chain C
50S ribosomal protein L2
Chain D
50S ribosomal protein L3
Chain E
50S ribosomal protein L4
Chain L
50S ribosomal protein L15
Chain M
50S ribosomal protein L16
Chain S
50S ribosomal protein L22
Chain v
Api137
Chain y
Alternative stalled-ribosome rescue factor B

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 1.1194 s