J5_6YST_007

3D structure

PDB id

6YST (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the P+9 ArfB-ribosome complex with P/E hybrid tRNA in the post-hydrolysis state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGG*CGUG*CUUUC*GAAG*CAAG

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6YST|1|a|C|36
6YST|1|a|U|37
6YST|1|a|G|38
6YST|1|a|G|39
*
6YST|1|a|C|403
6YST|1|a|G|404
6YST|1|a|U|405
6YST|1|a|G|406
*
6YST|1|a|C|436
6YST|1|a|U|437
6YST|1|a|U|438
6YST|1|a|U|439
6YST|1|a|C|440
*
6YST|1|a|G|497
6YST|1|a|A|498
6YST|1|a|A|499
6YST|1|a|G|500
*
6YST|1|a|C|545
6YST|1|a|A|546
6YST|1|a|A|547
6YST|1|a|G|548

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain d

30S ribosomal protein S4

Chain l

30S ribosomal protein S12