J5_6YT9_001
3D structure
- PDB id
- 6YT9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Acinetobacter baumannii ribosome-tigecycline complex - 30S subunit body
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CUGG*CGUG*CUUUA*UAAG*CGAG
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6YT9_001 not in the Motif Atlas
- Homologous match to J5_5J7L_001
- Geometric discrepancy: 0.0715
- The information below is about J5_5J7L_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_92941.1
- Basepair signature
- cWW-F-cHW-F-tSS-F-cWW-cWW-F-F-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
6YT9|1|2|C|38
6YT9|1|2|U|39
6YT9|1|2|G|40
6YT9|1|2|G|41
*
6YT9|1|2|C|399
6YT9|1|2|G|400
6YT9|1|2|U|401
6YT9|1|2|G|402
*
6YT9|1|2|C|432
6YT9|1|2|U|433
6YT9|1|2|U|434
6YT9|1|2|U|435
6YT9|1|2|A|436
*
6YT9|1|2|U|494
6YT9|1|2|A|495
6YT9|1|2|A|496
6YT9|1|2|G|497
*
6YT9|1|2|C|542
6YT9|1|2|G|543
6YT9|1|2|A|544
6YT9|1|2|G|545
Current chains
- Chain 2
- 16S ribosomal RNA
Nearby chains
- Chain e
- 30S ribosomal protein S4
- Chain m
- 30S ribosomal protein S12
Coloring options: