J5_6Z1P_002
3D structure
- PDB id
- 6Z1P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mitochondrial ribosome from Tetrahymena thermophila
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CGAGUU*AGAC*GUUU*AC*GAUAAUG
- Length
- 23 nucleotides
- Bulged bases
- 6Z1P|1|Ab|U|1130
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6Z1P_002 not in the Motif Atlas
- Homologous match to J5_4WF9_004
- Geometric discrepancy: 0.146
- The information below is about J5_4WF9_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.6
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
6Z1P|1|Ab|C|475
6Z1P|1|Ab|G|476
6Z1P|1|Ab|A|477
6Z1P|1|Ab|G|478
6Z1P|1|Ab|U|479
6Z1P|1|Ab|U|480
*
6Z1P|1|Ab|A|549
6Z1P|1|Ab|G|550
6Z1P|1|Ab|A|551
6Z1P|1|Ab|C|552
*
6Z1P|1|Ab|G|684
6Z1P|1|Ab|U|685
6Z1P|1|Ab|U|686
6Z1P|1|Ab|U|687
*
6Z1P|1|Ab|A|1074
6Z1P|1|Ab|C|1075
*
6Z1P|1|Ab|G|1125
6Z1P|1|Ab|A|1126
6Z1P|1|Ab|U|1127
6Z1P|1|Ab|A|1128
6Z1P|1|Ab|A|1129
6Z1P|1|Ab|U|1130
6Z1P|1|Ab|G|1131
Current chains
- Chain Ab
- LSU rRNA_2
Nearby chains
- Chain AF
- bL35m
- Chain AJ
- Ribosomal protein L51/S25/CI-B8 domain protein
- Chain Aa
- LSU rRNA_1
- Chain Ae
- 50S ribosomal protein L4
- Chain Aq
- Ribosomal protein L15, putative
- Chain Au
- 50S ribosomal protein L20
- Chain Av
- 50S ribosomal protein L21
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