J5_6Z1P_003
3D structure
- PDB id
- 6Z1P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mitochondrial ribosome from Tetrahymena thermophila
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GAAGACC*GGAUAACAG*CCUCGAUGU*GUUUAA*UGGUC
- Length
- 36 nucleotides
- Bulged bases
- 6Z1P|1|Ab|A|2142, 6Z1P|1|Ab|U|2143, 6Z1P|1|Ab|G|2199, 6Z1P|1|Ab|U|2279, 6Z1P|1|Ab|U|2303
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6Z1P|1|Ab|G|1777
6Z1P|1|Ab|A|1778
6Z1P|1|Ab|A|1779
6Z1P|1|Ab|G|1780
6Z1P|1|Ab|A|1781
6Z1P|1|Ab|C|1782
6Z1P|1|Ab|C|1783
*
6Z1P|1|Ab|G|2140
6Z1P|1|Ab|G|2141
6Z1P|1|Ab|A|2142
6Z1P|1|Ab|U|2143
6Z1P|1|Ab|A|2144
6Z1P|1|Ab|A|2145
6Z1P|1|Ab|C|2146
6Z1P|1|Ab|A|2147
6Z1P|1|Ab|G|2148
*
6Z1P|1|Ab|C|2192
6Z1P|1|Ab|C|2193
6Z1P|1|Ab|U|2194
6Z1P|1|Ab|C|2195
6Z1P|1|Ab|G|2196
6Z1P|1|Ab|A|2197
6Z1P|1|Ab|U|2198
6Z1P|1|Ab|G|2199
6Z1P|1|Ab|U|2200
*
6Z1P|1|Ab|G|2277
6Z1P|1|Ab|U|2278
6Z1P|1|Ab|U|2279
6Z1P|1|Ab|U|2280
6Z1P|1|Ab|A|2281
6Z1P|1|Ab|A|2282
*
6Z1P|1|Ab|U|2300
6Z1P|1|Ab|G|2301
6Z1P|1|Ab|G|2302
6Z1P|1|Ab|U|2303
6Z1P|1|Ab|C|2304
Current chains
- Chain Ab
- LSU rRNA_2
Nearby chains
- Chain AD
- bL32m
- Chain Ac
- Ribosomal protein L2
- Chain Ad
- 50S ribosomal protein L3
- Chain Ae
- 50S ribosomal protein L4
- Chain Aq
- Ribosomal protein L15, putative
- Chain Ar
- Ribosomal protein L16
- Chain Aw
- Ribosomal protein L22/L17e
Coloring options: