J5_6Z1P_005

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUAA*UGGA*UAGUGCGA*UAGGAGAAG*CAAG

Length

29 nucleotides

Bulged bases

6Z1P|1|Bb|A|457

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Z1P|1|Ba|C|62
6Z1P|1|Ba|U|63
6Z1P|1|Ba|A|64
6Z1P|1|Ba|A|65
*
6Z1P|1|Bb|U|423
6Z1P|1|Bb|G|424
6Z1P|1|Bb|G|425
6Z1P|1|Bb|A|426
*
6Z1P|1|Bb|U|456
6Z1P|1|Bb|A|457
6Z1P|1|Bb|G|458
6Z1P|1|Bb|U|459
6Z1P|1|Bb|G|460
6Z1P|1|Bb|C|461
6Z1P|1|Bb|G|462
6Z1P|1|Bb|A|463
*
6Z1P|1|Bb|U|486
6Z1P|1|Bb|A|487
6Z1P|1|Bb|G|488
6Z1P|1|Bb|G|489
6Z1P|1|Bb|A|490
6Z1P|1|Bb|G|491
6Z1P|1|Bb|A|492
6Z1P|1|Bb|A|493
6Z1P|1|Bb|G|494
*
6Z1P|1|Bb|C|540
6Z1P|1|Bb|A|541
6Z1P|1|Bb|A|542
6Z1P|1|Bb|G|543

Current chains

Chain Ba

SSU rRNA_1

Chain Bb

SSU rRNA_2

Nearby chains

Chain Be

Ymf76

Chain Bl

Ribosomal protein S12

Chain Bp

30S ribosomal protein S16