J5_6Z1P_007

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGAG*CGUCAAGG*CAU*AU*ACAG

Length

21 nucleotides

Bulged bases

6Z1P|1|Ba|C|131, 6Z1P|1|Bb|C|372

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Z1P|1|Ba|C|84
6Z1P|1|Ba|G|85
6Z1P|1|Ba|A|86
6Z1P|1|Ba|G|87
*
6Z1P|1|Ba|C|128
6Z1P|1|Ba|G|129
6Z1P|1|Ba|U|130
6Z1P|1|Ba|C|131
6Z1P|1|Ba|A|132
6Z1P|1|Ba|A|133
6Z1P|1|Ba|G|134
6Z1P|1|Ba|G|135
*
6Z1P|1|Bb|C|339
6Z1P|1|Bb|A|340
6Z1P|1|Bb|U|341
*
6Z1P|1|Bb|A|362
6Z1P|1|Bb|U|363
*
6Z1P|1|Bb|A|371
6Z1P|1|Bb|C|372
6Z1P|1|Bb|A|373
6Z1P|1|Bb|G|374

Current chains

Chain Ba

SSU rRNA_1

Chain Bb

SSU rRNA_2

Nearby chains

Chain Ad

50S ribosomal protein L3

Chain Ap

Ribosomal protein L14

Chain BD

IGR motif protein

Chain Bp

30S ribosomal protein S16