J5_6Z6J_002
3D structure
- PDB id
- 6Z6J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GGAGUC*GGAC*GUUC*GC*GCAGAUC
- Length
- 23 nucleotides
- Bulged bases
- 6Z6J|1|C1|U|1436
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6Z6J_002 not in the Motif Atlas
- Homologous match to J5_8P9A_011
- Geometric discrepancy: 0.0723
- The information below is about J5_8P9A_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_63811.1
- Basepair signature
- cWW-tSH-tSS-tHW-F-cWS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
6Z6J|1|C1|G|658
6Z6J|1|C1|G|659
6Z6J|1|C1|A|660
6Z6J|1|C1|G|661
6Z6J|1|C1|U|662
6Z6J|1|C1|C|663
*
6Z6J|1|C1|G|799
6Z6J|1|C1|G|800
6Z6J|1|C1|A|801
6Z6J|1|C1|C|802
*
6Z6J|1|C1|G|941
6Z6J|1|C1|U|942
6Z6J|1|C1|U|943
6Z6J|1|C1|C|944
*
6Z6J|1|C1|G|1375
6Z6J|1|C1|C|1376
*
6Z6J|1|C1|G|1431
6Z6J|1|C1|C|1432
6Z6J|1|C1|A|1433
6Z6J|1|C1|G|1434
6Z6J|1|C1|A|1435
6Z6J|1|C1|U|1436
6Z6J|1|C1|C|1437
Current chains
- Chain C1
- 25S rRNA
Nearby chains
- Chain C3
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LC
- 60S ribosomal protein L4-A
- Chain LL
- 60S ribosomal protein L13-A
- Chain LN
- 60S ribosomal protein L15-A
- Chain La
- 60S ribosomal protein L28
- Chain Le
- 60S ribosomal protein L32
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