J5_6Z6J_006
3D structure
- PDB id
- 6Z6J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- UUGA*UUUG*CA*UG*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 6Z6J|1|C1|G|2418, 6Z6J|1|C1|A|2799, 6Z6J|1|C1|G|2800, 6Z6J|1|C1|A|2801, 6Z6J|1|C1|A|2802
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6Z6J_006 not in the Motif Atlas
- Homologous match to J5_8P9A_015
- Geometric discrepancy: 0.1649
- The information below is about J5_8P9A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_08912.1
- Basepair signature
- cWW-cWH-cWH-tSS-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
6Z6J|1|C1|U|2416
6Z6J|1|C1|U|2417
6Z6J|1|C1|G|2418
6Z6J|1|C1|A|2419
*
6Z6J|1|C1|U|2611
6Z6J|1|C1|U|2612
6Z6J|1|C1|U|2613
6Z6J|1|C1|G|2614
*
6Z6J|1|C1|C|2627
6Z6J|1|C1|A|2628
*
6Z6J|1|C1|U|2650
6Z6J|1|C1|G|2651
*
6Z6J|1|C1|C|2798
6Z6J|1|C1|A|2799
6Z6J|1|C1|G|2800
6Z6J|1|C1|A|2801
6Z6J|1|C1|A|2802
6Z6J|1|C1|A|2803
6Z6J|1|C1|A|2804
Current chains
- Chain C1
- 25S rRNA
Nearby chains
- Chain LA
- 60S ribosomal protein L2-A
- Chain LN
- 60S ribosomal protein L15-A
- Chain LQ
- 60S ribosomal protein L18-A
- Chain LT
- 60S ribosomal protein L21-A
- Chain La
- 60S ribosomal protein L28
- Chain Lb
- 60S ribosomal protein L29
- Chain Lo
- 60S ribosomal protein L42-A
Coloring options: