J5_6Z6J_009
3D structure
- PDB id
- 6Z6J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- ACUUUG*UUUCCU*ACUUU*AUAGAAUAGGAC*GUAAUGAU
- Length
- 37 nucleotides
- Bulged bases
- 6Z6J|1|C2|U|639, 6Z6J|1|C2|U|694, 6Z6J|1|C2|C|696, 6Z6J|1|C2|U|742, 6Z6J|1|C2|U|813, 6Z6J|1|C2|G|815, 6Z6J|1|C2|A|856
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6Z6J|1|C2|A|636
6Z6J|1|C2|C|637
6Z6J|1|C2|U|638
6Z6J|1|C2|U|639
6Z6J|1|C2|U|640
6Z6J|1|C2|G|641
*
6Z6J|1|C2|U|693
6Z6J|1|C2|U|694
6Z6J|1|C2|U|695
6Z6J|1|C2|C|696
6Z6J|1|C2|C|697
6Z6J|1|C2|U|698
*
6Z6J|1|C2|A|740
6Z6J|1|C2|C|741
6Z6J|1|C2|U|742
6Z6J|1|C2|U|743
6Z6J|1|C2|U|744
*
6Z6J|1|C2|A|807
6Z6J|1|C2|U|808
6Z6J|1|C2|A|809
6Z6J|1|C2|G|810
6Z6J|1|C2|A|811
6Z6J|1|C2|A|812
6Z6J|1|C2|U|813
6Z6J|1|C2|A|814
6Z6J|1|C2|G|815
6Z6J|1|C2|G|816
6Z6J|1|C2|A|817
6Z6J|1|C2|C|818
*
6Z6J|1|C2|G|853
6Z6J|1|C2|U|854
6Z6J|1|C2|A|855
6Z6J|1|C2|A|856
6Z6J|1|C2|U|857
6Z6J|1|C2|G|858
6Z6J|1|C2|A|859
6Z6J|1|C2|U|860
Current chains
- Chain C2
- 18S rRNA
Nearby chains
- Chain LR
- 60S ribosomal protein L19-A
- Chain SE
- 40S ribosomal protein S4-A
- Chain SH
- 40S ribosomal protein S7-A
- Chain SL
- 40S ribosomal protein S11-A
- Chain SN
- 40S ribosomal protein S13
- Chain SW
- 40S ribosomal protein S22-A
Coloring options: