J5_6Z6K_004
3D structure
- PDB id
- 6Z6K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GCAAAAUAG*UG*UG*CGGACAAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 6Z6K|1|C1|G|2116, 6Z6K|1|C1|G|2121
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6Z6K_004 not in the Motif Atlas
- Homologous match to J5_8C3A_004
- Geometric discrepancy: 0.104
- The information below is about J5_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6Z6K|1|C1|G|1906
6Z6K|1|C1|C|1907
6Z6K|1|C1|A|1908
6Z6K|1|C1|A|1909
6Z6K|1|C1|A|1910
6Z6K|1|C1|A|1911
6Z6K|1|C1|U|1912
6Z6K|1|C1|A|1913
6Z6K|1|C1|G|1914
*
6Z6K|1|C1|U|1938
6Z6K|1|C1|G|1939
*
6Z6K|1|C1|U|2109
6Z6K|1|C1|G|2110
*
6Z6K|1|C1|C|2114
6Z6K|1|C1|G|2115
6Z6K|1|C1|G|2116
6Z6K|1|C1|A|2117
6Z6K|1|C1|C|2118
6Z6K|1|C1|A|2119
6Z6K|1|C1|A|2120
6Z6K|1|C1|G|2121
6Z6K|1|C1|G|2122
*
6Z6K|1|C1|C|2331
6Z6K|1|C1|A|2332
6Z6K|1|C1|C|2333
Current chains
- Chain C1
- 25S rRNA
Nearby chains
- Chain C2
- Small subunit ribosomal RNA; SSU rRNA
- Chain LB
- 60S ribosomal protein L3
- Chain LR
- 60S ribosomal protein L19-A
- Chain LV
- 60S ribosomal protein L23-A
- Chain LW
- 60S ribosomal protein L24-A
Coloring options: