J5_6Z6K_005
3D structure
- PDB id
- 6Z6K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU
- Length
- 40 nucleotides
- Bulged bases
- 6Z6K|1|C1|A|2404, 6Z6K|1|C1|A|2817, 6Z6K|1|C1|G|2874, 6Z6K|1|C1|U|2978, 6Z6K|1|C1|U|2979
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6Z6K|1|C1|A|2399
6Z6K|1|C1|G|2400
6Z6K|1|C1|A|2401
6Z6K|1|C1|A|2402
6Z6K|1|C1|G|2403
6Z6K|1|C1|A|2404
6Z6K|1|C1|C|2405
6Z6K|1|C1|C|2406
*
6Z6K|1|C1|G|2815
6Z6K|1|C1|G|2816
6Z6K|1|C1|A|2817
6Z6K|1|C1|U|2818
6Z6K|1|C1|A|2819
6Z6K|1|C1|A|2820
6Z6K|1|C1|C|2821
6Z6K|1|C1|U|2822
6Z6K|1|C1|G|2823
*
6Z6K|1|C1|C|2867
6Z6K|1|C1|U|2868
6Z6K|1|C1|U|2869
6Z6K|1|C1|C|2870
6Z6K|1|C1|G|2871
6Z6K|1|C1|A|2872
6Z6K|1|C1|U|2873
6Z6K|1|C1|G|2874
6Z6K|1|C1|U|2875
6Z6K|1|C1|C|2876
*
6Z6K|1|C1|G|2951
6Z6K|1|C1|G|2952
6Z6K|1|C1|U|2953
6Z6K|1|C1|U|2954
6Z6K|1|C1|U|2955
6Z6K|1|C1|A|2956
6Z6K|1|C1|G|2957
*
6Z6K|1|C1|U|2975
6Z6K|1|C1|A|2976
6Z6K|1|C1|G|2977
6Z6K|1|C1|U|2978
6Z6K|1|C1|U|2979
6Z6K|1|C1|U|2980
Current chains
- Chain C1
- 25S rRNA
Nearby chains
- Chain LA
- 60S ribosomal protein L2-A
- Chain LB
- 60S ribosomal protein L3
- Chain LC
- 60S ribosomal protein L4-A
- Chain LP
- 60S ribosomal protein L17-A
- Chain La
- 60S ribosomal protein L28
- Chain Lb
- 60S ribosomal protein L29
Coloring options: