J5_6Z6K_009

3D structure

PDB id

6Z6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

ACUUUG*UUUCCU*ACUUU*AUAGAAUAGGA*UAAUGAU

Length

35 nucleotides

Bulged bases

6Z6K|1|C2|U|639, 6Z6K|1|C2|U|694, 6Z6K|1|C2|C|696, 6Z6K|1|C2|U|742, 6Z6K|1|C2|U|813, 6Z6K|1|C2|G|815, 6Z6K|1|C2|A|856

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Z6K|1|C2|A|636
6Z6K|1|C2|C|637
6Z6K|1|C2|U|638
6Z6K|1|C2|U|639
6Z6K|1|C2|U|640
6Z6K|1|C2|G|641
*
6Z6K|1|C2|U|693
6Z6K|1|C2|U|694
6Z6K|1|C2|U|695
6Z6K|1|C2|C|696
6Z6K|1|C2|C|697
6Z6K|1|C2|U|698
*
6Z6K|1|C2|A|740
6Z6K|1|C2|C|741
6Z6K|1|C2|U|742
6Z6K|1|C2|U|743
6Z6K|1|C2|U|744
*
6Z6K|1|C2|A|807
6Z6K|1|C2|U|808
6Z6K|1|C2|A|809
6Z6K|1|C2|G|810
6Z6K|1|C2|A|811
6Z6K|1|C2|A|812
6Z6K|1|C2|U|813
6Z6K|1|C2|A|814
6Z6K|1|C2|G|815
6Z6K|1|C2|G|816
6Z6K|1|C2|A|817
*
6Z6K|1|C2|U|854
6Z6K|1|C2|A|855
6Z6K|1|C2|A|856
6Z6K|1|C2|U|857
6Z6K|1|C2|G|858
6Z6K|1|C2|A|859
6Z6K|1|C2|U|860

Current chains

Chain C2

18S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19-A

Chain SE

40S ribosomal protein S4-A

Chain SH

40S ribosomal protein S7-A

Chain SL

40S ribosomal protein S11-A

Chain SN

40S ribosomal protein S13

Chain SW

40S ribosomal protein S22-A