J5_6Z6M_001

3D structure

PDB id

6Z6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human 80S ribosomes bound to EBP1, eEF2 and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUGG*CGA*UUG*CGCG*CC

Length

16 nucleotides

Bulged bases

6Z6M|1|CC|U|8, 6Z6M|1|CC|G|9, 6Z6M|1|CC|C|57

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6Z6M_001 not in the Motif Atlas

Homologous match to J5_3ZGZ_001

Geometric discrepancy: 0.3557

The information below is about J5_3ZGZ_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_97113.1

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

6Z6M|1|CC|G|7
6Z6M|1|CC|U|8
6Z6M|1|CC|G|9
6Z6M|1|CC|G|10
*
6Z6M|1|CC|C|25
6Z6M|1|CC|G|26
6Z6M|1|CC|A|27
*
6Z6M|1|CC|U|43
6Z6M|1|CC|U|44
6Z6M|1|CC|G|45
*
6Z6M|1|CC|C|55
6Z6M|1|CC|G|56
6Z6M|1|CC|C|57
6Z6M|1|CC|G|58
*
6Z6M|1|CC|C|74
6Z6M|1|CC|C|75

Current chains

Chain CC

tRNA

Nearby chains

Chain Lo

60S ribosomal protein L36a