Loop J5_6Z6M

3D structure

PDB id: 6Z6M (explore in PDB, NAKB, or RNA 3D Hub)
Description: Cryo-EM structure of human 80S ribosomes bound to EBP1, eEF2 and SERBP1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å

Loop

Sequence: AAGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUUU
Length: 42 nucleotides
Bulged bases: 6Z6M|1|L5|A|3908, 6Z6M|1|L5|A|4394, 6Z6M|1|L5|G|4451, 6Z6M|1|L5|U|4555, 6Z6M|1|L5|U|4556
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6Z6M|1|L5|A|3902
6Z6M|1|L5|A|3903
6Z6M|1|L5|G|3904
6Z6M|1|L5|A|3905
6Z6M|1|L5|A|3906
6Z6M|1|L5|G|3907
6Z6M|1|L5|A|3908
6Z6M|1|L5|C|3909
6Z6M|1|L5|C|3910
*
6Z6M|1|L5|G|4392
6Z6M|1|L5|G|4393
6Z6M|1|L5|A|4394
6Z6M|1|L5|U|4395
6Z6M|1|L5|A|4396
6Z6M|1|L5|A|4397
6Z6M|1|L5|C|4398
6Z6M|1|L5|U|4399
6Z6M|1|L5|G|4400
*
6Z6M|1|L5|C|4444
6Z6M|1|L5|U|4445
6Z6M|1|L5|U|4446
6Z6M|1|L5|C|4447
6Z6M|1|L5|G|4448
6Z6M|1|L5|A|4449
6Z6M|1|L5|U|4450
6Z6M|1|L5|G|4451
6Z6M|1|L5|U|4452
6Z6M|1|L5|C|4453
*
6Z6M|1|L5|G|4528
6Z6M|1|L5|G|4529
6Z6M|1|L5|U|4530
6Z6M|1|L5|U|4531
6Z6M|1|L5|U|4532
6Z6M|1|L5|A|4533
6Z6M|1|L5|G|4534
*
6Z6M|1|L5|U|4552
6Z6M|1|L5|A|4553
6Z6M|1|L5|G|4554
6Z6M|1|L5|U|4555
6Z6M|1|L5|U|4556
6Z6M|1|L5|U|4557
6Z6M|1|L5|U|4558

Current chains

Chain L5: 28S rRNA

Nearby chains

Chain LA: 60S ribosomal protein L8
Chain LB: 60S ribosomal protein L3
Chain LC: 60S ribosomal protein L4
Chain Lb: 60S ribosomal protein L29

J5_6Z6M_006