J5_6Z6M_010

3D structure

PDB id

6Z6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human 80S ribosomes bound to EBP1, eEF2 and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGCUC*GGGC*GUG*CCG*CG

Length

17 nucleotides

Bulged bases

6Z6M|1|S2|G|126, 6Z6M|1|S2|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Z6M|1|S2|C|125
6Z6M|1|S2|G|126
6Z6M|1|S2|C|127
6Z6M|1|S2|U|128
6Z6M|1|S2|C|129
*
6Z6M|1|S2|G|183
6Z6M|1|S2|G|184
6Z6M|1|S2|G|185
6Z6M|1|S2|C|186
*
6Z6M|1|S2|G|213
6Z6M|1|S2|U|214
6Z6M|1|S2|G|215
*
6Z6M|1|S2|C|310
6Z6M|1|S2|C|311
6Z6M|1|S2|G|312
*
6Z6M|1|S2|C|337
6Z6M|1|S2|G|338

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4, X isoform

Chain SG

40S ribosomal protein S6