J5_6ZJ3_001
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- UGAGGA(A2M)G*CGAACG*CCA*UGC*GGA
- Length
- 23 nucleotides
- Bulged bases
- 6ZJ3|1|LA|G|36, 6ZJ3|1|LA|C|122
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6ZJ3|1|LA|U|33
6ZJ3|1|LA|G|34
6ZJ3|1|LA|A|35
6ZJ3|1|LA|G|36
6ZJ3|1|LA|G|37
6ZJ3|1|LA|A|38
6ZJ3|1|LA|A2M|39
6ZJ3|1|LA|G|40
*
6ZJ3|1|LA|C|108
6ZJ3|1|LA|G|109
6ZJ3|1|LA|A|110
6ZJ3|1|LA|A|111
6ZJ3|1|LA|C|112
6ZJ3|1|LA|G|113
*
6ZJ3|1|LA|C|121
6ZJ3|1|LA|C|122
6ZJ3|1|LA|A|123
*
6ZJ3|1|LA|U|145
6ZJ3|1|LA|G|146
6ZJ3|1|LA|C|147
*
6ZJ3|1|LB|G|180
6ZJ3|1|LB|G|181
6ZJ3|1|LB|A|182
Current chains
- Chain LA
- 5.8S rRNA
- Chain LB
- LSU rRNA chain 1
Nearby chains
- Chain L1
- Ribosomal protein eL39
- Chain LF
- Large subunit ribosomal RNA; LSU rRNA
- Chain LG
- LSU rRNA chain 6
- Chain LH
- Large subunit ribosomal RNA; LSU rRNA
- Chain Lb
- Ribosomal protein eL15
- Chain Lk
- Ribosomal protein uL23
- Chain Lp
- Ribosomal protein uL29
- Chain Ly
- Ribosomal protein eL37
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