J5_6ZJ3_002
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- CCAG*CGUGG*CAACUAUCCU*AC*GCUUG
- Length
- 26 nucleotides
- Bulged bases
- 6ZJ3|1|LE|A|1012, 6ZJ3|1|LE|C|1083, 6ZJ3|1|LE|U|1084, 6ZJ3|1|LE|U|1085
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6ZJ3|1|LE|C|961
6ZJ3|1|LE|C|962
6ZJ3|1|LE|A|963
6ZJ3|1|LE|G|964
*
6ZJ3|1|LE|C|996
6ZJ3|1|LE|G|997
6ZJ3|1|LE|U|998
6ZJ3|1|LE|G|999
6ZJ3|1|LE|G|1000
*
6ZJ3|1|LE|C|1007
6ZJ3|1|LE|A|1008
6ZJ3|1|LE|A|1009
6ZJ3|1|LE|C|1010
6ZJ3|1|LE|U|1011
6ZJ3|1|LE|A|1012
6ZJ3|1|LE|U|1013
6ZJ3|1|LE|C|1014
6ZJ3|1|LE|C|1015
6ZJ3|1|LE|U|1016
*
6ZJ3|1|LE|A|1044
6ZJ3|1|LE|C|1045
*
6ZJ3|1|LE|G|1082
6ZJ3|1|LE|C|1083
6ZJ3|1|LE|U|1084
6ZJ3|1|LE|U|1085
6ZJ3|1|LE|G|1086
Current chains
- Chain LE
- LSU rRNA chain 4
Nearby chains
- Chain LB
- Large subunit ribosomal RNA; LSU rRNA
- Chain LR
- Ribosomal protein uL4
- Chain LX
- Ribosomal protein eL13
- Chain La
- Ribosomal protein uL15
- Chain Le
- Ribosomal protein eL18
- Chain Lh
- Ribosomal protein eL21
- Chain Lq
- Ribosomal protein eL29
- Chain Lx
- Ribosomal protein eL36
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