J5_6ZJ3_004
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- (A2M)GAAGACC*(OMG)GAUAACUG*CUU(5MC)GAUGUC*GG(UR3)U(PSU)AG*(PSU)GGUUU
- Length
- 40 nucleotides
- Bulged bases
- 6ZJ3|1|LH|A|2892, 6ZJ3|1|LI|A|3403, 6ZJ3|1|LI|U|3459, 6ZJ3|1|LI|U|3565
- QA status
- Modified nucleotides: A2M, OMG, 5MC, UR3, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6ZJ3|1|LH|A2M|2887
6ZJ3|1|LH|G|2888
6ZJ3|1|LH|A|2889
6ZJ3|1|LH|A|2890
6ZJ3|1|LH|G|2891
6ZJ3|1|LH|A|2892
6ZJ3|1|LH|C|2893
6ZJ3|1|LH|C|2894
*
6ZJ3|1|LI|OMG|3401
6ZJ3|1|LI|G|3402
6ZJ3|1|LI|A|3403
6ZJ3|1|LI|U|3404
6ZJ3|1|LI|A|3405
6ZJ3|1|LI|A|3406
6ZJ3|1|LI|C|3407
6ZJ3|1|LI|U|3408
6ZJ3|1|LI|G|3409
*
6ZJ3|1|LI|C|3453
6ZJ3|1|LI|U|3454
6ZJ3|1|LI|U|3455
6ZJ3|1|LI|5MC|3456
6ZJ3|1|LI|G|3457
6ZJ3|1|LI|A|3458
6ZJ3|1|LI|U|3459
6ZJ3|1|LI|G|3460
6ZJ3|1|LI|U|3461
6ZJ3|1|LI|C|3462
*
6ZJ3|1|LI|G|3538
6ZJ3|1|LI|G|3539
6ZJ3|1|LI|UR3|3540
6ZJ3|1|LI|U|3541
6ZJ3|1|LI|PSU|3542
6ZJ3|1|LI|A|3543
6ZJ3|1|LI|G|3544
*
6ZJ3|1|LI|PSU|3562
6ZJ3|1|LI|G|3563
6ZJ3|1|LI|G|3564
6ZJ3|1|LI|U|3565
6ZJ3|1|LI|U|3566
6ZJ3|1|LI|U|3567
Current chains
- Chain LH
- LSU rRNA chain 7
- Chain LI
- LSU rRNA chain 8
Nearby chains
- Chain LE
- Large subunit ribosomal RNA; LSU rRNA
- Chain LF
- Large subunit ribosomal RNA; LSU rRNA
- Chain LP
- Ribosomal protein uL2
- Chain LQ
- Ribosomal protein uL3
- Chain LR
- Ribosomal protein uL4
- Chain La
- Ribosomal protein uL15
- Chain Li
- Ribosomal protein uL22
- Chain Lq
- Ribosomal protein eL29
- Chain S2
- Transfer RNA; tRNA
- Chain S3
- Transfer RNA; tRNA
Coloring options: