J5_6ZJ3_007

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

C(PSU)UU*AGUAGC*GGAAUGGA*(PSU)(OMG)AGU(A2M)UCA(A2M)CC*GAGGG

Length

35 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU, OMG, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZJ3|1|S1|C|31
6ZJ3|1|S1|PSU|32
6ZJ3|1|S1|U|33
6ZJ3|1|S1|U|34
*
6ZJ3|1|S1|A|575
6ZJ3|1|S1|G|576
6ZJ3|1|S1|U|577
6ZJ3|1|S1|A|578
6ZJ3|1|S1|G|579
6ZJ3|1|S1|C|580
*
6ZJ3|1|S1|G|613
6ZJ3|1|S1|G|614
6ZJ3|1|S1|A|615
6ZJ3|1|S1|A|616
6ZJ3|1|S1|U|617
6ZJ3|1|S1|G|618
6ZJ3|1|S1|G|619
6ZJ3|1|S1|A|620
*
6ZJ3|1|S1|PSU|640
6ZJ3|1|S1|OMG|641
6ZJ3|1|S1|A|642
6ZJ3|1|S1|G|643
6ZJ3|1|S1|U|644
6ZJ3|1|S1|A2M|645
6ZJ3|1|S1|U|646
6ZJ3|1|S1|C|647
6ZJ3|1|S1|A|648
6ZJ3|1|S1|A2M|649
6ZJ3|1|S1|C|650
6ZJ3|1|S1|C|651
*
6ZJ3|1|S1|G|695
6ZJ3|1|S1|A|696
6ZJ3|1|S1|G|697
6ZJ3|1|S1|G|698
6ZJ3|1|S1|G|699

Current chains

Chain S1

18S rRNA

Nearby chains

Chain SD

Ribosomal protein uS4

Chain SP

Ribosomal protein uS12

Chain Se

Ribosomal protein eS30