J5_6ZLW_002

3D structure

PDB id

6ZLW (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human 40S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAUCCAU*AUAG

Length

35 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZLW|1|2|C|30
6ZLW|1|2|U|31
6ZLW|1|2|U|32
6ZLW|1|2|G|33
6ZLW|1|2|U|34
*
6ZLW|1|2|A|521
6ZLW|1|2|A|522
6ZLW|1|2|A|523
6ZLW|1|2|U|524
6ZLW|1|2|A|525
6ZLW|1|2|A|526
6ZLW|1|2|C|527
*
6ZLW|1|2|G|558
6ZLW|1|2|G|559
6ZLW|1|2|A|560
6ZLW|1|2|A|561
6ZLW|1|2|U|562
6ZLW|1|2|G|563
6ZLW|1|2|A|564
6ZLW|1|2|G|565
*
6ZLW|1|2|C|585
6ZLW|1|2|G|586
6ZLW|1|2|A|587
6ZLW|1|2|G|588
6ZLW|1|2|G|589
6ZLW|1|2|A|590
6ZLW|1|2|U|591
6ZLW|1|2|C|592
6ZLW|1|2|C|593
6ZLW|1|2|A|594
6ZLW|1|2|U|595
*
6ZLW|1|2|A|641
6ZLW|1|2|U|642
6ZLW|1|2|A|643
6ZLW|1|2|G|644

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain J

40S ribosomal protein S9

Chain X

40S ribosomal protein S23

Chain e

40S ribosomal protein S30