J5_6ZLW_004

3D structure

PDB id

6ZLW (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human 40S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UCGCUCG*CGGG*UG*CCG*CGA

Length

19 nucleotides

Bulged bases

6ZLW|1|2|G|126, 6ZLW|1|2|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZLW|1|2|U|124
6ZLW|1|2|C|125
6ZLW|1|2|G|126
6ZLW|1|2|C|127
6ZLW|1|2|U|128
6ZLW|1|2|C|129
6ZLW|1|2|G|130
*
6ZLW|1|2|C|182
6ZLW|1|2|G|183
6ZLW|1|2|G|184
6ZLW|1|2|G|185
*
6ZLW|1|2|U|214
6ZLW|1|2|G|215
*
6ZLW|1|2|C|310
6ZLW|1|2|C|311
6ZLW|1|2|G|312
*
6ZLW|1|2|C|337
6ZLW|1|2|G|338
6ZLW|1|2|A|339

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4, X isoform

Chain G

40S ribosomal protein S6

Chain I

40S ribosomal protein S8