J5_6ZM7_001
3D structure
- PDB id
- 6ZM7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GUG*CGAUGAAG*CGAACG*CG*UAC
- Length
- 22 nucleotides
- Bulged bases
- 6ZM7|1|L8|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6ZM7_001 not in the Motif Atlas
- Homologous match to J5_8P9A_010
- Geometric discrepancy: 0.105
- The information below is about J5_8P9A_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_27223.1
- Basepair signature
- cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
6ZM7|1|L5|G|19
6ZM7|1|L5|U|20
6ZM7|1|L5|G|21
*
6ZM7|1|L8|C|35
6ZM7|1|L8|G|36
6ZM7|1|L8|A|37
6ZM7|1|L8|U|38
6ZM7|1|L8|G|39
6ZM7|1|L8|A|40
6ZM7|1|L8|A|41
6ZM7|1|L8|G|42
*
6ZM7|1|L8|C|101
6ZM7|1|L8|G|102
6ZM7|1|L8|A|103
6ZM7|1|L8|A|104
6ZM7|1|L8|C|105
6ZM7|1|L8|G|106
*
6ZM7|1|L8|C|113
6ZM7|1|L8|G|114
*
6ZM7|1|L8|U|136
6ZM7|1|L8|A|137
6ZM7|1|L8|C|138
Current chains
- Chain L5
- 28S ribosomal RNA
- Chain L8
- 5.8S ribosomal RNA
Nearby chains
- Chain LN
- 60S ribosomal protein L15
- Chain LX
- 60S ribosomal protein L23a
- Chain Lh
- 60S ribosomal protein L35
- Chain Lj
- 60S ribosomal protein L37
- Chain Ll
- 60S ribosomal protein L39
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