J5_6ZME_004

3D structure

PDB id

6ZME (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AAGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUUU

Length

42 nucleotides

Bulged bases

6ZME|1|L5|A|3908, 6ZME|1|L5|A|4394, 6ZME|1|L5|U|4450, 6ZME|1|L5|G|4451, 6ZME|1|L5|U|4452, 6ZME|1|L5|U|4555, 6ZME|1|L5|U|4556

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZME|1|L5|A|3902
6ZME|1|L5|A|3903
6ZME|1|L5|G|3904
6ZME|1|L5|A|3905
6ZME|1|L5|A|3906
6ZME|1|L5|G|3907
6ZME|1|L5|A|3908
6ZME|1|L5|C|3909
6ZME|1|L5|C|3910
*
6ZME|1|L5|G|4392
6ZME|1|L5|G|4393
6ZME|1|L5|A|4394
6ZME|1|L5|U|4395
6ZME|1|L5|A|4396
6ZME|1|L5|A|4397
6ZME|1|L5|C|4398
6ZME|1|L5|U|4399
6ZME|1|L5|G|4400
*
6ZME|1|L5|C|4444
6ZME|1|L5|U|4445
6ZME|1|L5|U|4446
6ZME|1|L5|C|4447
6ZME|1|L5|G|4448
6ZME|1|L5|A|4449
6ZME|1|L5|U|4450
6ZME|1|L5|G|4451
6ZME|1|L5|U|4452
6ZME|1|L5|C|4453
*
6ZME|1|L5|G|4528
6ZME|1|L5|G|4529
6ZME|1|L5|U|4530
6ZME|1|L5|U|4531
6ZME|1|L5|U|4532
6ZME|1|L5|A|4533
6ZME|1|L5|G|4534
*
6ZME|1|L5|U|4552
6ZME|1|L5|A|4553
6ZME|1|L5|G|4554
6ZME|1|L5|U|4555
6ZME|1|L5|U|4556
6ZME|1|L5|U|4557
6ZME|1|L5|U|4558

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain CH

Eukaryotic peptide chain release factor subunit 1

Chain LA

60S ribosomal protein L8

Chain LB

60S ribosomal protein L3

Chain LC

60S ribosomal protein L4

Chain La

60S ribosomal protein L27a

Chain Lb

60S ribosomal protein L29