J5_6ZMI_004
3D structure
- PDB id
- 6ZMI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- AAGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUUU
- Length
- 42 nucleotides
- Bulged bases
- 6ZMI|1|L5|A|3908, 6ZMI|1|L5|A|4394, 6ZMI|1|L5|U|4450, 6ZMI|1|L5|G|4451, 6ZMI|1|L5|U|4555, 6ZMI|1|L5|U|4556
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6ZMI|1|L5|A|3902
6ZMI|1|L5|A|3903
6ZMI|1|L5|G|3904
6ZMI|1|L5|A|3905
6ZMI|1|L5|A|3906
6ZMI|1|L5|G|3907
6ZMI|1|L5|A|3908
6ZMI|1|L5|C|3909
6ZMI|1|L5|C|3910
*
6ZMI|1|L5|G|4392
6ZMI|1|L5|G|4393
6ZMI|1|L5|A|4394
6ZMI|1|L5|U|4395
6ZMI|1|L5|A|4396
6ZMI|1|L5|A|4397
6ZMI|1|L5|C|4398
6ZMI|1|L5|U|4399
6ZMI|1|L5|G|4400
*
6ZMI|1|L5|C|4444
6ZMI|1|L5|U|4445
6ZMI|1|L5|U|4446
6ZMI|1|L5|C|4447
6ZMI|1|L5|G|4448
6ZMI|1|L5|A|4449
6ZMI|1|L5|U|4450
6ZMI|1|L5|G|4451
6ZMI|1|L5|U|4452
6ZMI|1|L5|C|4453
*
6ZMI|1|L5|G|4528
6ZMI|1|L5|G|4529
6ZMI|1|L5|U|4530
6ZMI|1|L5|U|4531
6ZMI|1|L5|U|4532
6ZMI|1|L5|A|4533
6ZMI|1|L5|G|4534
*
6ZMI|1|L5|U|4552
6ZMI|1|L5|A|4553
6ZMI|1|L5|G|4554
6ZMI|1|L5|U|4555
6ZMI|1|L5|U|4556
6ZMI|1|L5|U|4557
6ZMI|1|L5|U|4558
Current chains
- Chain L5
- 28S ribosomal RNA
Nearby chains
- Chain LA
- 60S ribosomal protein L8
- Chain LB
- 60S ribosomal protein L3
- Chain LC
- 60S ribosomal protein L4
- Chain Lb
- 60S ribosomal protein L29
Coloring options: