J5_6ZMI_006

3D structure

PDB id

6ZMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAUCCAU*AUAG

Length

35 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZMI|1|S2|C|30
6ZMI|1|S2|U|31
6ZMI|1|S2|U|32
6ZMI|1|S2|G|33
6ZMI|1|S2|U|34
*
6ZMI|1|S2|A|521
6ZMI|1|S2|A|522
6ZMI|1|S2|A|523
6ZMI|1|S2|U|524
6ZMI|1|S2|A|525
6ZMI|1|S2|A|526
6ZMI|1|S2|C|527
*
6ZMI|1|S2|G|558
6ZMI|1|S2|G|559
6ZMI|1|S2|A|560
6ZMI|1|S2|A|561
6ZMI|1|S2|U|562
6ZMI|1|S2|G|563
6ZMI|1|S2|A|564
6ZMI|1|S2|G|565
*
6ZMI|1|S2|C|585
6ZMI|1|S2|G|586
6ZMI|1|S2|A|587
6ZMI|1|S2|G|588
6ZMI|1|S2|G|589
6ZMI|1|S2|A|590
6ZMI|1|S2|U|591
6ZMI|1|S2|C|592
6ZMI|1|S2|C|593
6ZMI|1|S2|A|594
6ZMI|1|S2|U|595
*
6ZMI|1|S2|A|641
6ZMI|1|S2|U|642
6ZMI|1|S2|A|643
6ZMI|1|S2|G|644

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SJ

40S ribosomal protein S9

Chain SX

40S ribosomal protein S23

Chain Se

40S ribosomal protein S30