J5_6ZMO_001

3D structure

PDB id

6ZMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AUGG*CGC*GUC*GGCG*CU

Length

16 nucleotides

Bulged bases

6ZMO|1|CB|U|8, 6ZMO|1|CB|G|9, 6ZMO|1|CB|C|59

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6ZMO_001 not in the Motif Atlas

Homologous match to J5_3ZGZ_001

Geometric discrepancy: 0.3265

The information below is about J5_3ZGZ_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_97113.1

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

6ZMO|1|CB|A|7
6ZMO|1|CB|U|8
6ZMO|1|CB|G|9
6ZMO|1|CB|G|10
*
6ZMO|1|CB|C|26
6ZMO|1|CB|G|27
6ZMO|1|CB|C|28
*
6ZMO|1|CB|G|44
6ZMO|1|CB|U|45
6ZMO|1|CB|C|46
*
6ZMO|1|CB|G|57
6ZMO|1|CB|G|58
6ZMO|1|CB|C|59
6ZMO|1|CB|G|60
*
6ZMO|1|CB|C|76
6ZMO|1|CB|U|77

Current chains

Chain CB

tRNA

Nearby chains

Chain CD

Elongation factor 1-alpha 1