Loop J5_6ZMO

3D structure

PDB id: 6ZMO (explore in PDB, NAKB, or RNA 3D Hub)
Description: SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complex
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å

Loop

Sequence: AAGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUUU
Length: 42 nucleotides
Bulged bases: 6ZMO|1|L5|A|3908, 6ZMO|1|L5|A|4394, 6ZMO|1|L5|G|4451, 6ZMO|1|L5|U|4555, 6ZMO|1|L5|U|4556
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6ZMO|1|L5|A|3902
6ZMO|1|L5|A|3903
6ZMO|1|L5|G|3904
6ZMO|1|L5|A|3905
6ZMO|1|L5|A|3906
6ZMO|1|L5|G|3907
6ZMO|1|L5|A|3908
6ZMO|1|L5|C|3909
6ZMO|1|L5|C|3910
*
6ZMO|1|L5|G|4392
6ZMO|1|L5|G|4393
6ZMO|1|L5|A|4394
6ZMO|1|L5|U|4395
6ZMO|1|L5|A|4396
6ZMO|1|L5|A|4397
6ZMO|1|L5|C|4398
6ZMO|1|L5|U|4399
6ZMO|1|L5|G|4400
*
6ZMO|1|L5|C|4444
6ZMO|1|L5|U|4445
6ZMO|1|L5|U|4446
6ZMO|1|L5|C|4447
6ZMO|1|L5|G|4448
6ZMO|1|L5|A|4449
6ZMO|1|L5|U|4450
6ZMO|1|L5|G|4451
6ZMO|1|L5|U|4452
6ZMO|1|L5|C|4453
*
6ZMO|1|L5|G|4528
6ZMO|1|L5|G|4529
6ZMO|1|L5|U|4530
6ZMO|1|L5|U|4531
6ZMO|1|L5|U|4532
6ZMO|1|L5|A|4533
6ZMO|1|L5|G|4534
*
6ZMO|1|L5|U|4552
6ZMO|1|L5|A|4553
6ZMO|1|L5|G|4554
6ZMO|1|L5|U|4555
6ZMO|1|L5|U|4556
6ZMO|1|L5|U|4557
6ZMO|1|L5|U|4558

Current chains

Chain L5: 28S ribosomal RNA

Nearby chains

Chain LA: 60S ribosomal protein L8
Chain LB: 60S ribosomal protein L3
Chain LC: 60S ribosomal protein L4
Chain Lb: 60S ribosomal protein L29

J5_6ZMO_005