J5_6ZMT_002

3D structure

PDB id

6ZMT (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAUCCAU*AUAG

Length

35 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZMT|1|2|C|30
6ZMT|1|2|U|31
6ZMT|1|2|U|32
6ZMT|1|2|G|33
6ZMT|1|2|U|34
*
6ZMT|1|2|A|521
6ZMT|1|2|A|522
6ZMT|1|2|A|523
6ZMT|1|2|U|524
6ZMT|1|2|A|525
6ZMT|1|2|A|526
6ZMT|1|2|C|527
*
6ZMT|1|2|G|558
6ZMT|1|2|G|559
6ZMT|1|2|A|560
6ZMT|1|2|A|561
6ZMT|1|2|U|562
6ZMT|1|2|G|563
6ZMT|1|2|A|564
6ZMT|1|2|G|565
*
6ZMT|1|2|C|585
6ZMT|1|2|G|586
6ZMT|1|2|A|587
6ZMT|1|2|G|588
6ZMT|1|2|G|589
6ZMT|1|2|A|590
6ZMT|1|2|U|591
6ZMT|1|2|C|592
6ZMT|1|2|C|593
6ZMT|1|2|A|594
6ZMT|1|2|U|595
*
6ZMT|1|2|A|641
6ZMT|1|2|U|642
6ZMT|1|2|A|643
6ZMT|1|2|G|644

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain J

40S ribosomal protein S9

Chain X

40S ribosomal protein S23

Chain e

40S ribosomal protein S30

Chain u

Pre-rRNA-processing protein TSR1 homolog