J5_6ZMT_005

3D structure

PDB id

6ZMT (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGCUCG*CGGG*UG*CCG*CG

Length

17 nucleotides

Bulged bases

6ZMT|1|2|G|126, 6ZMT|1|2|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZMT|1|2|C|125
6ZMT|1|2|G|126
6ZMT|1|2|C|127
6ZMT|1|2|U|128
6ZMT|1|2|C|129
6ZMT|1|2|G|130
*
6ZMT|1|2|C|182
6ZMT|1|2|G|183
6ZMT|1|2|G|184
6ZMT|1|2|G|185
*
6ZMT|1|2|U|214
6ZMT|1|2|G|215
*
6ZMT|1|2|C|310
6ZMT|1|2|C|311
6ZMT|1|2|G|312
*
6ZMT|1|2|C|337
6ZMT|1|2|G|338

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4, X isoform

Chain G

40S ribosomal protein S6

Chain I

40S ribosomal protein S8