J5_6ZOJ_001

3D structure

PDB id

6ZOJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2-Nsp1-40S complex, composite map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAUCCAU*AUAG

Length

35 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZOJ|1|2|C|30
6ZOJ|1|2|U|31
6ZOJ|1|2|U|32
6ZOJ|1|2|G|33
6ZOJ|1|2|U|34
*
6ZOJ|1|2|A|521
6ZOJ|1|2|A|522
6ZOJ|1|2|A|523
6ZOJ|1|2|U|524
6ZOJ|1|2|A|525
6ZOJ|1|2|A|526
6ZOJ|1|2|C|527
*
6ZOJ|1|2|G|558
6ZOJ|1|2|G|559
6ZOJ|1|2|A|560
6ZOJ|1|2|A|561
6ZOJ|1|2|U|562
6ZOJ|1|2|G|563
6ZOJ|1|2|A|564
6ZOJ|1|2|G|565
*
6ZOJ|1|2|C|585
6ZOJ|1|2|G|586
6ZOJ|1|2|A|587
6ZOJ|1|2|G|588
6ZOJ|1|2|G|589
6ZOJ|1|2|A|590
6ZOJ|1|2|U|591
6ZOJ|1|2|C|592
6ZOJ|1|2|C|593
6ZOJ|1|2|A|594
6ZOJ|1|2|U|595
*
6ZOJ|1|2|A|641
6ZOJ|1|2|U|642
6ZOJ|1|2|A|643
6ZOJ|1|2|G|644

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain J

40S ribosomal protein S9

Chain X

40S ribosomal protein S23

Chain e

40S ribosomal protein S30