J5_6ZOJ_003

3D structure

PDB id

6ZOJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2-Nsp1-40S complex, composite map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUCGCUC*GGG*UG*CCG*CGACC

Length

20 nucleotides

Bulged bases

6ZOJ|1|2|G|126, 6ZOJ|1|2|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZOJ|1|2|G|123
6ZOJ|1|2|U|124
6ZOJ|1|2|C|125
6ZOJ|1|2|G|126
6ZOJ|1|2|C|127
6ZOJ|1|2|U|128
6ZOJ|1|2|C|129
*
6ZOJ|1|2|G|183
6ZOJ|1|2|G|184
6ZOJ|1|2|G|185
*
6ZOJ|1|2|U|214
6ZOJ|1|2|G|215
*
6ZOJ|1|2|C|310
6ZOJ|1|2|C|311
6ZOJ|1|2|G|312
*
6ZOJ|1|2|C|337
6ZOJ|1|2|G|338
6ZOJ|1|2|A|339
6ZOJ|1|2|C|340
6ZOJ|1|2|C|341

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4, X isoform

Chain G

40S ribosomal protein S6

Chain I

40S ribosomal protein S8