J5_6ZOK_001

3D structure

PDB id

6ZOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2-Nsp1-40S complex, focused on body

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAUCCAU*AUAG

Length

35 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZOK|1|2|C|30
6ZOK|1|2|U|31
6ZOK|1|2|U|32
6ZOK|1|2|G|33
6ZOK|1|2|U|34
*
6ZOK|1|2|A|521
6ZOK|1|2|A|522
6ZOK|1|2|A|523
6ZOK|1|2|U|524
6ZOK|1|2|A|525
6ZOK|1|2|A|526
6ZOK|1|2|C|527
*
6ZOK|1|2|G|558
6ZOK|1|2|G|559
6ZOK|1|2|A|560
6ZOK|1|2|A|561
6ZOK|1|2|U|562
6ZOK|1|2|G|563
6ZOK|1|2|A|564
6ZOK|1|2|G|565
*
6ZOK|1|2|C|585
6ZOK|1|2|G|586
6ZOK|1|2|A|587
6ZOK|1|2|G|588
6ZOK|1|2|G|589
6ZOK|1|2|A|590
6ZOK|1|2|U|591
6ZOK|1|2|C|592
6ZOK|1|2|C|593
6ZOK|1|2|A|594
6ZOK|1|2|U|595
*
6ZOK|1|2|A|641
6ZOK|1|2|U|642
6ZOK|1|2|A|643
6ZOK|1|2|G|644

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain J

40S ribosomal protein S9

Chain X

40S ribosomal protein S23

Chain e

40S ribosomal protein S30